PyMOL

PyMOL

Download PyMOL free for PC and phone


A powerful open-source tool for molecular visualization and modeling, designed primarily for scientists and researchers. This application enables the detailed study of molecular structures, allowing users to manipulate them, select specific atoms, and generate high-quality 3D images and animations. Workflows are supported through both a graphical interface and a command line, with scripting capabilities to automate repetitive tasks. Built-in ray tracing rendering adds realistic depth and shadows to scenes, and results can be easily exported to popular formats for publication and presentation.


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11 Jun 2026
Title PyMOL
Size 367.4 MB
Price free of charge
Category Utilities
Developer DeLano Scientific LLC.
System Windows
367.4 MB
4

169 reviews
1527

downloads
The content of games with a PEGI 3 rating is considered suitable for all age groups. The game should not contain any sounds or pictures that are likely to frighten young children. A very mild form of violence (in a comical context or a childlike setting) is acceptable. No bad language should be heard.

Equivalent to E (low end) and EC (which is no longer used). 435 titles were rated PEGI 3 in 2020.
PEGI Rating

PyMOL installation

download

Click on the Download button to start downloading PyMOL for Windows from Maombi.com

open

Open the .exe installation file in the Downloads folder and double click it

props

Follow the instructions in the pop-up window to install PyMOL on Windows Desktop

run

Now you can open and run PyMOL on your PC

PyMOL Features

PyMOL is a professional-grade tool for visualizing and analyzing molecular structures. It provides scientists with powerful capabilities for creating high-quality images, animating molecular dynamics, and automating tasks through scripting. Users can explore complex biological systems, customize display settings, and generate publication-ready materials with ease.

Molecular Visualization

Molecular Visualization

Create detailed 3D models of molecular structures with support for various display styles and rendering techniques.

Animation & Movies

Animation & Movies

Generate animated sequences that show the movement and interaction of molecules over time for dynamic analysis.

Scripting & Automation

Scripting & Automation

Automate repetitive tasks and complex analyses using the built-in scripting language, based on Python.

High-Quality Rendering

High-Quality Rendering

Utilize advanced rendering with support for shadows, depth, and ray tracing to produce photorealistic images.

Flexible Customization

Flexible Customization

Enjoy extensive customization options for coloring, highlighting, labeling, and selecting specific atoms or chains.

Data Export

Data Export

Save your results in popular formats like PNG, ready for use in publications, presentations, and reports.

PyMOL overview

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    01

    Explore molecular structures through an intuitive interface. Rotate and zoom models to examine them from every angle. Easily highlight different elements and analyze their interactions. Dive into the world of biochemistry and open new research horizons using powerful visualization tools

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    02

    Study molecular structures with a clear 3D viewer. Rotate and change the view of molecules to better understand their architecture and interactions. Intuitive mouse controls make the process straightforward, while a variety of color schemes help emphasize key elements. Select residues and analyze their behavior in real time

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    Investigate molecular structures with a robust visualization tool. Rotate and move models to view them from all sides. Support for multiple file formats makes importing and exporting data simple. A clean interface and customizable commands turn complex molecular work into an intuitive process

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    04

    Examine molecules in 3D, where every detail becomes vivid. Rotate and scale models to inspect their structure up close. Conveniently select and highlight residues to explore atomic interactions. Visualization simplifies complex chemical processes and structures, making learning both engaging and effective

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    05

    Easily load and visualize molecules, making this an ideal tool for structural biology. Control the display: hide or show specific elements to focus on the details that matter. A command line lets you enter instructions quickly, while built-in tools help create clear representations for analysis. Learn and explore the molecular world with ease

PyMOL FAQ

PyMOL

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